DAG wiki

User Tools

Site Tools

Trace:
analysis:fmri:afni

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
Last revisionBoth sides next revision
analysis:fmri:afni [2021/03/09 12:22] – igorkagananalysis:fmri:afni [2021/03/17 08:12] – [Converting electrode localization prob. maps VMPs from original ACPC space to NMT] igorkagan
Line 6: Line 6:
  
 3dAllineate -1Dmatrix_apply curius_anat_composite_linear_to_template.1D -prefix CU_NMT -source CUclean_20130627_ACPC.nii  3dAllineate -1Dmatrix_apply curius_anat_composite_linear_to_template.1D -prefix CU_NMT -source CUclean_20130627_ACPC.nii 
- 
 3dNwarpApply -nwarp curius_anat_shft_WARP.nii.gz -source CU_NMT+tlrc.BRIK 3dNwarpApply -nwarp curius_anat_shft_WARP.nii.gz -source CU_NMT+tlrc.BRIK
 +3dAFNItoNIFTI CU_NMT_Nwarp+tlrc.BRIK
  
-3dAFNItoNIFTI CU_NMT_Nwarp+tlrc.BRIK+3dAllineate -1Dmatrix_apply bacchus_2_anat_composite_linear_to_template.1D -prefix BA_NMT -source BA_noclean_20140711_ACPC_brain_NE_0.5.nii 
 +3dNwarpApply -nwarp bacchus_2_anat_shft_WARP.nii.gz -source BA_NMT+tlrc.BRIK 
 +3dAFNItoNIFTI BA_NMT_Nwarp+tlrc.BRIK
  
 </code> </code>
Line 56: Line 58:
  
 igor@alex-Precision-T3610:~/VMP_warps$ igor@alex-Precision-T3610:~/VMP_warps$
-cp /mnt/KognitiveNeurowissenschaften/DAG/MRI/Curius/2NMT/vmp/el_dPul_p.nii .+cp /mnt/KognitiveNeurowissenschaften/DAG/MRI/Curius/2NMT/electrode_localization/el_dPul_p.nii .
 3dAllineate -master CU_NMT_Nwarp.nii -1Dmatrix_apply curius_anat_composite_linear_to_template.1D -prefix el_dPul_p -source  el_dPul_p.nii 3dAllineate -master CU_NMT_Nwarp.nii -1Dmatrix_apply curius_anat_composite_linear_to_template.1D -prefix el_dPul_p -source  el_dPul_p.nii
 3dNwarpApply -nwarp curius_anat_shft_WARP.nii.gz -source el_dPul_p+tlrc.BRIK 3dNwarpApply -nwarp curius_anat_shft_WARP.nii.gz -source el_dPul_p+tlrc.BRIK
 3dAFNItoNIFTI el_dPul_p_Nwarp+tlrc.BRIK 3dAFNItoNIFTI el_dPul_p_Nwarp+tlrc.BRIK
-sudo cp el_dPul_p_Nwarp.nii  /mnt/KognitiveNeurowissenschaften/DAG/MRI/Curius/2NMT/vmp/+sudo cp el_dPul_p_Nwarp.nii  /mnt/KognitiveNeurowissenschaften/DAG/MRI/Curius/2NMT/electrode_localization/
  
 </code> </code>
analysis/fmri/afni.txt · Last modified: 2022/12/29 07:15 by 127.0.0.1