3dAllineate -1Dmatrix_apply curius_anat_composite_linear_to_template.1D -prefix CU_NMT -source CUclean_20130627_ACPC.nii 
 
3dNwarpApply -nwarp curius_anat_shft_WARP.nii.gz -source CU_NMT+tlrc.BRIK
 
3dAFNItoNIFTI CU_NMT_Nwarp+tlrc.BRIK

Y:\MRI\Curius\2NMT\vmp

Original vmp: dPul_p.vmp, “nominal” res 2 mm, actual 1 mm

ne_change_nii_header_resolution('dPul_p.nii',1);

igor@alex-Precision-T3610:~/VMP_warps$
cp /mnt/KognitiveNeurowissenschaften/DAG/MRI/Curius/2NMT/vmp/dPul_p.nii .
3dAllineate -master CU_NMT_Nwarp.nii -newgrid 1 -1Dmatrix_apply curius_anat_composite_linear_to_template.1D -prefix dPul_p -source  dPul_p.nii
3dNwarpApply -nwarp curius_anat_shft_WARP.nii.gz -source dPul_p+tlrc.BRIK
3dAFNItoNIFTI dPul_p_Nwarp+tlrc.BRIK
sudo cp dPul_p_Nwarp.nii  /mnt/KognitiveNeurowissenschaften/DAG/MRI/Curius/2NMT/vmp/

ne_change_nii_header_resolution('dPul_p_Nwarp.nii',2);
ne_afni_nii2vmp('dPul_p_Nwarp.nii','t',2,'','dPul_p.vmp');