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analysis:fmri:experimentaldesign [2015/01/22 17:36] igorkagananalysis:fmri:experimentaldesign [2022/12/29 07:15] (current) – external edit 127.0.0.1
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 === Chris Rorden fMRI Simulator === === Chris Rorden fMRI Simulator ===
-http://www.mccauslandcenter.sc.edu/CRNL/tools/fmrisim+http://www.mccauslandcenter.sc.edu/crnl/tools/fmristim
  
 === optseq2 ===  === optseq2 === 
 optseq2 is a tool for automatically scheduling events for rapid-presentation event-related (RPER) fMRI experiments (the schedule is the order and timing of events): http://surfer.nmr.mgh.harvard.edu/optseq/ optseq2 is a tool for automatically scheduling events for rapid-presentation event-related (RPER) fMRI experiments (the schedule is the order and timing of events): http://surfer.nmr.mgh.harvard.edu/optseq/
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 Good explanation about optseq and event-related designs: http://andysbrainblog.blogspot.de/2012/09/optseq-and-event-related-designs.html Good explanation about optseq and event-related designs: http://andysbrainblog.blogspot.de/2012/09/optseq-and-event-related-designs.html
  
 +=== AFNI tools === 
   * **RSFgen** is a AFNI tool for paradigm design: http://afni.nimh.nih.gov/pub/dist/doc/program_help/RSFgen.html   * **RSFgen** is a AFNI tool for paradigm design: http://afni.nimh.nih.gov/pub/dist/doc/program_help/RSFgen.html
   * **make_random_timing.py** is a AFNI tool to define multiple events, their responses and their time series: http://afni.nimh.nih.gov/pub/dist/doc/program_help/make_random_timing.py.html    * **make_random_timing.py** is a AFNI tool to define multiple events, their responses and their time series: http://afni.nimh.nih.gov/pub/dist/doc/program_help/make_random_timing.py.html 
-  * **3dDeconvolve** is a AFNI tool to evaluate the power of each experimental desgin: http://afni.nimh.nih.gov/pub/dist/doc/program_help/3dDeconvolve.html+  * **3dDeconvolve** is a AFNI tool to evaluate the power of each experimental desgin:  
 +  * http://afni.nimh.nih.gov/pub/dist/doc/program_help/3dDeconvolve.html 
 +  * http://afni.nimh.nih.gov/pub/dist/edu/latest/afni07_advanced/afni07_advanced.pdf 
 +  * http://afni.nimh.nih.gov/pub/dist/doc/manual/Deconvolvem.pdf 
 +  * http://afni.nimh.nih.gov/pub/dist/edu/latest/afni_handouts/afni17_ht03.pdf 
 + 
 + 
  
 AFNI background experimental design:  AFNI background experimental design: 
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 ===  Multiple Trial Type fMRI (mttfmri) MATLAB Toolbox  === ===  Multiple Trial Type fMRI (mttfmri) MATLAB Toolbox  ===
 http://fmri.ucsd.edu/tliu/mttfmri_toolbox.html http://fmri.ucsd.edu/tliu/mttfmri_toolbox.html
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 ===== Theory ===== ===== Theory =====
  
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 Design efficiency in fMRI: http://imaging.mrc-cbu.cam.ac.uk/imaging/DesignEfficiency Design efficiency in fMRI: http://imaging.mrc-cbu.cam.ac.uk/imaging/DesignEfficiency
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 MIT imaging library (with paper PDFs): http://web.mit.edu/swg/imaginglibrary.htm MIT imaging library (with paper PDFs): http://web.mit.edu/swg/imaginglibrary.htm
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analysis/fmri/experimentaldesign.1421948208.txt.gz · Last modified: 2022/12/29 07:15 (external edit)