DAG wiki

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====== Atlases resources ======

===== Human =====

http://www.thehumanbrain.info/index.php

http://www.talairach.org/applet.html

http://imaging.mrc-cbu.cam.ac.uk/imaging/NeuroanatomyTutorial

http://headneckbrainspine.com/web_flash/newmodules/Brain%20MRI.swf | NOTE: brain is not in AP-PC or TAL!!!

Talairach -> MNI conversion: http://www.brainmap.org/icbm2tal/

http://culhamlab.ssc.uwo.ca/fmri4newbies/BrainAnatomy.html

Talairach explanation from MIPAV:
http://mipav.cit.nih.gov/pubwiki/index.php/Select_Algorithms_and_Brain_Tools_for_Talairach_Transform

http://www.brainarchitecture.org/ (human and marmoset!)

===== Monkey (and human) ==== 

http://braininfo.rprc.washington.edu/

http://brainmaps.org/index.php

MNI Macaque Atlas http://www.bic.mni.mcgill.ca/ServicesAtlases/Macaque

Scalable Brain Atlases (monkey | human) http://scalablebrainatlas.incf.org/main/index.php

Neuroimaging Informatics Tools and Resources Clearing house http://www.nitrc.org

The INIA19 primate brain atlas was created from over 100 structural MR scans of 19 rhesus macaque animals. The atlas currently comprises high-resolution T1-weighted average MR images with and without skull stripping, tissue probability maps, and a detailed parcellation map based on the NeuroMaps atlas.
http://www.nitrc.org/projects/inia19/

Wisconsin ADRC Imaging Core Resource Pages, 112RM-SL atlas:  http://brainmap.wisc.edu/pages

JIP MGH Templates for monkey brain: http://www.nmr.mgh.harvard.edu/~jbm/mgh-jip/

Normalizing DARTEL Templates to MNI Space http://brainmap.wisc.edu/pages/8-Normalizing-DARTEL-Templates-to-MNI-Space

Very high resolution postmortem, different modalities! http://www.civm.duhs.duke.edu/rhesusatlas/

Conversion from macaque_atlas_WISC_112RM-SL to F99: http://afni.nimh.nih.gov/sscc/staff/glend/MacaqueAtlas/

Reveley, C. et al., 2016. Three-Dimensional Digital Template Atlas of the Macaque Brain. Cerebral Cortex. Available at: http://cercor.oxfordjournals.org/cgi/doi/10.1093/cercor/bhw248 [Accessed February 22, 2017].

-- "Note that in contrast with other templates (e.g., Calabrese et al. 2015 ), the AC and posterior commissure was not used here to define the slicing angle."

===== Local copies and corresponding BrainVoyager files =====

(Y: is DAG CNL server)

Y:\Atlases\Macaque

Y:\Atlases\Human