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--- atlases:atlases_resources [2014/05/15 10:18] – igorkagan
+++ atlases:atlases_resources [2022/12/29 07:15] (current) – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
 ====== Atlases resources ======
+===== Human =====
+http://www.thehumanbrain.info/index.php
+http://www.talairach.org/applet.html
+http://imaging.mrc-cbu.cam.ac.uk/imaging/NeuroanatomyTutorial
+http://headneckbrainspine.com/web_flash/newmodules/Brain%20MRI.swf | NOTE: brain is not in AP-PC or TAL!!!
+Talairach -> MNI conversion: http://www.brainmap.org/icbm2tal/
+http://culhamlab.ssc.uwo.ca/fmri4newbies/BrainAnatomy.html
+Talairach explanation from MIPAV:
+http://mipav.cit.nih.gov/pubwiki/index.php/Select_Algorithms_and_Brain_Tools_for_Talairach_Transform
+http://www.brainarchitecture.org/ (human and marmoset!)
+===== Monkey (and human) ====
 http://braininfo.rprc.washington.edu/
@@ Line 5: / Line 26: @@
 http://brainmaps.org/index.php
-http://www.thehumanbrain.info/index.php
+MNI Macaque Atlas http://www.bic.mni.mcgill.ca/ServicesAtlases/Macaque
+Scalable Brain Atlases (monkey | human) http://scalablebrainatlas.incf.org/main/index.php
+Neuroimaging Informatics Tools and Resources Clearing house http://www.nitrc.org
+The INIA19 primate brain atlas was created from over 100 structural MR scans of 19 rhesus macaque animals. The atlas currently comprises high-resolution T1-weighted average MR images with and without skull stripping, tissue probability maps, and a detailed parcellation map based on the NeuroMaps atlas.
+http://www.nitrc.org/projects/inia19/
+Wisconsin ADRC Imaging Core Resource Pages, 112RM-SL atlas:  http://brainmap.wisc.edu/pages
+JIP MGH Templates for monkey brain: http://www.nmr.mgh.harvard.edu/~jbm/mgh-jip/
+Normalizing DARTEL Templates to MNI Space http://brainmap.wisc.edu/pages/8-Normalizing-DARTEL-Templates-to-MNI-Space
+Very high resolution postmortem, different modalities! http://www.civm.duhs.duke.edu/rhesusatlas/
+Conversion from macaque_atlas_WISC_112RM-SL to F99: http://afni.nimh.nih.gov/sscc/staff/glend/MacaqueAtlas/
+Reveley, C. et al., 2016. Three-Dimensional Digital Template Atlas of the Macaque Brain. Cerebral Cortex. Available at: http://cercor.oxfordjournals.org/cgi/doi/10.1093/cercor/bhw248 [Accessed February 22, 2017].
+-- "Note that in contrast with other templates (e.g., Calabrese et al. 2015 ), the AC and posterior commissure was not used here to define the slicing angle."
+===== Local copies and corresponding BrainVoyager files =====
+(Y: is DAG CNL server)
+Y:\Atlases\Macaque
+Y:\Atlases\Human
-http://www.talairach.org/applet.html