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contents [2017/10/24 08:35] lukas.schneider ePhys pipeline added |
contents [2021/11/29 16:26] igorkagan [ePhys pipeline] |
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[[Lab-Organization:Lab-Organization_Calendars]] | [[Lab-Organization:Lab-Organization_Calendars]] | ||
- | ===== Logs ===== | + | [[Lab-Organization:Lab-Organization_Zotero_and_GitHub]] |
- | [[Logs:ScanLogs:3T_UMG_scanlog]] | ||
===== BrainVoyager ===== | ===== BrainVoyager ===== | ||
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[[BrainVoyager:BrainVoyager_HumanAlignment]] | [[BrainVoyager:BrainVoyager_HumanAlignment]] | ||
+ | |||
+ | [[BrainVoyager:BrainVoyager_Contrasts]] | ||
===== NeuroElf ===== | ===== NeuroElf ===== | ||
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[[MATLAB:MATLAB_documentation_guidelines]] | [[MATLAB:MATLAB_documentation_guidelines]] | ||
+ | |||
+ | [[MATLAB:MATLAB_FieldTrip]] | ||
+ | |||
+ | [[MATLAB:MATLAB_PATH]] | ||
+ | |||
===== Atlases ===== | ===== Atlases ===== | ||
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[[References:Zotero_instructions]] | [[References:Zotero_instructions]] | ||
- | |||
===== Decision-Making ===== | ===== Decision-Making ===== | ||
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[[Setups:Setup3]] | [[Setups:Setup3]] | ||
+ | |||
+ | [[Setups:UMG psychophysics setup]] | ||
+ | |||
+ | [[Setups:DPZ MRI setup]] | ||
===== ePhys pipeline ===== | ===== ePhys pipeline ===== | ||
- | [[ePhys pipeline:Complete pipeline step by step]] | + | [[ePhys pipeline:Pipeline overview]] |
- | [[ePhys pipeline:Electrode depth file]] | + | [[ePhys pipeline:phys_gui]] |
- | [[ePhys pipeline:Creating Plexon sort codes]] | + | [[ePhys pipeline:waveclus]] |
+ | |||
+ | [[ePhys pipeline:Electrode depth file]] | ||
[[ePhys pipeline:Same cells file]] | [[ePhys pipeline:Same cells file]] | ||
- | [[ePhys pipeline:excel table]] | + | [[ePhys pipeline:Excel table]] |
+ | |||
+ | [[ePhys pipeline:Dataset convention]] | ||
+ | |||
+ | [[ePhys pipeline:TDT2Plexon]] | ||
+ | |||
+ | [[ePhys pipeline:Spike analysis postprocessing]] | ||
- | [[ePhys pipeline:Synchronize behavior to ePhys]] | ||
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[[Analysis:Stat:ANOVA]] | [[Analysis:Stat:ANOVA]] | ||
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+ | [[Analysis:Stat:BayesFactor]] | ||
+ | |||
==== fMRI ==== | ==== fMRI ==== | ||
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[[Analysis:fMRI:CollinearPredictors]] | [[Analysis:fMRI:CollinearPredictors]] | ||
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+ | [[Analysis:fMRI:SNR]] | ||
+ | |||
+ | [[Analysis:fMRI:AFNI]] | ||
==== Spectral ==== | ==== Spectral ==== |