User Tools

Site Tools


contents

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision
Previous revision
Next revisionBoth sides next revision
contents [2021/12/14 10:12] – added spike analysis main page lukas.schneidercontents [2022/07/05 15:03] lukas.schneider
Line 1: Line 1:
-====== Manually updated contents page ====== 
- 
-Add pages in hierarchical manner here. 
- 
- 
----- 
- 
-__Note:__ Some of instructions are organized via GoogleDocs DAG folder, assessable via yours or dag.labmember gmail account:  
-https://drive.google.com/?authuser=0#folders/0B8170PnHBunGYzA2OGNjMTEtYTg5ZS00NzE4LTg1N2ItY2JlYTFhYzdiMmY3  
- 
----- 
- 
-===== Lab organization ===== 
- 
-[[Lab-Organization:Lab-Organization_GoogleDrive]] 
- 
-[[Lab-Organization:Lab-Organization_Calendars]] 
- 
-[[Lab-Organization:Lab-Organization_Zotero_and_GitHub]] 
- 
- 
-===== BrainVoyager ===== 
- 
-[[BrainVoyager:BrainVoyager_Resources]] 
- 
-[[BrainVoyager:BrainVoyager_Shortcuts]] 
- 
-[[BrainVoyager:BrainVoyager_Install_On_Linux]] 
- 
-[[BrainVoyager:BrainVoyager_Probabilistic_Maps]] 
- 
-[[BrainVoyager:BrainVoyager_Surfaces]] 
- 
-[[BrainVoyager:BrainVoyager_Dongles]] 
- 
-[[BrainVoyager:BrainVoyager_TransformVMP]] 
- 
-[[BrainVoyager:BrainVoyager_HumanAlignment]] 
- 
-[[BrainVoyager:BrainVoyager_Contrasts]] 
- 
-===== NeuroElf ===== 
- 
-[[NeuroElf:NeuroElf_resources]] Help and installation, DAG-specific bug fixes! 
- 
-[[NeuroElf:NeuroElf_pipeline]] 
- 
-[[NeuroElf:NeuroElf_based_functions]] 
- 
-[[NeuroElf:NeuroElf_BrainVoyager]] 
- 
-[[NeuroElf:NeuroElf_ToDo]] 
- 
-[[NeuroElf:NeuroElf_pipeline_v2]] 
-===== JIP ===== 
- 
-http://www.nmr.mgh.harvard.edu/~jbm/jip/ 
- 
-[[JIP:JIP_Install_On_Linux_Gnome]] 
- 
-===== Monkeypsych ===== 
- 
-[[Monkeypsych:Monkeypsych_installation]] 
- 
-[[Monkeypsych:Monkeypsych_changelog]] 
- 
-[[Monkeypsych:Monkeypsych_todo]] 
- 
-===== TDT ===== 
- 
-[[TDT:TDT_resources]] 
- 
-[[TDT:TDT_status]] 
- 
-[[TDT:TDT_ToDo]] 
- 
-[[TDT:TDT_FAQ]] 
- 
-===== MATLAB ===== 
- 
-[[MATLAB:MATLAB_Resources]] 
- 
-[[MATLAB:MATLAB_helpful_hacks]] 
- 
-[[MATLAB:MATLAB_documentation_guidelines]] 
- 
-[[MATLAB:MATLAB_FieldTrip]] 
- 
-[[MATLAB:MATLAB_PATH]] 
- 
-===== Atlases ===== 
- 
-Anatomical atlases and other resources 
- 
-[[Atlases:Atlases_resources]] 
- 
-http://culhamlab.ssc.uwo.ca/fmri4newbies/primeroncorticalsulci.html 
- 
-===== References ===== 
- 
-[[References:Zotero_instructions]] 
-===== Decision-Making ===== 
- 
-[[Decision-making:Decision-making_Resources]] 
- 
-===== Git source control ====== 
- 
-[[Git:Git_Resources]] 
- 
-===== Links ===== 
- 
-Miscellaneous science-related links you would like to share (with brief description) 
- 
-[[Links:Links_fMRI]] 
- 
-[[Links:Links_ephys]] 
- 
-[[Links:Links_statistics]] 
- 
-[[Links:Links_fun]] 
- 
-===== Linux ===== 
- 
-[[Linux:Linux_hacks]] 
- 
-===== Setups ===== 
- 
-[[Setups:Setup1]] 
- 
-[[Setups:Setup2]] 
- 
-[[Setups:Setup3]] 
- 
-[[Setups:UMG psychophysics setup]] 
- 
-[[Setups:DPZ MRI setup]] 
- 
- 
-===== ePhys pipeline ===== 
- 
-[[ePhys pipeline:1) Pipeline overview]] 
- 
-[[ePhys pipeline:phys_gui]] 
- 
-[[ePhys pipeline:waveclus]] 
- 
-[[ePhys pipeline:Electrode depth file]] 
- 
-[[ePhys pipeline:Same cells file]] 
- 
-[[ePhys pipeline:Excel table]] 
- 
-[[ePhys pipeline:Dataset convention]] 
- 
-[[ePhys pipeline:TDT2Plexon]] 
- 
-[[ePhys pipeline:Spike analysis postprocessing]] 
- 
- 
- 
-===== spike analysis pipeline ===== 
- 
-[[spike analysis pipeline:Pipeline overview]] 
- 
- 
- 
-===== Setup installation guides ===== 
- 
-[[Setups:Setup installation guides:eye tracker]] 
- 
-[[Setups:Setup installation guides:parallel port]] 
- 
-[[Setups:Setup installation guides:DAQ]] 
- 
- 
-===== Analysis ===== 
- 
-==== Stat ==== 
- 
-[[Analysis:Stat:FisherExactTest]] 
- 
-[[Analysis:Stat:StatPower]] 
- 
-[[Analysis:Stat:2DConfidenceEllipses]] 
- 
-[[Analysis:Stat:MarkovChain]] 
- 
-[[Analysis:Stat:ChiSquaredTest]] 
- 
-[[Analysis:Stat:r-to-ZTransform]] 
- 
-[[Analysis:Stat:ANOVA]] 
- 
-[[Analysis:Stat:BayesFactor]] 
- 
-==== fMRI ==== 
- 
-[[Analysis:fMRI:ExperimentalDesign]] 
- 
-[[Analysis:fMRI:ActivationMaps]] 
- 
-[[Analysis:fMRI:CollinearPredictors]] 
- 
-[[Analysis:fMRI:SNR]] 
- 
-[[Analysis:fMRI:AFNI]] 
- 
-==== Spectral ==== 
- 
-[[Analysis:Spectral:SpectralResources]] 
- 
-==== Planner ==== 
- 
-[[Planner:Planner_Installation]] 
- 
-[[Planner:Planner_Usage]]  
- 
-===== 3DReco ===== 
- 
-[[3DReco:3DRecoResources]] 
- 
-[[3DReco:angled_chamber_pipeline]] 
- 
  
contents.txt · Last modified: 2023/11/13 17:09 by i.kagan