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contents [2022/05/17 15:00] – [spike analysis pipeline] lukas.schneidercontents [2022/07/05 15:04] – [Git source control] lukas.schneider
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-====== Manually updated contents page ====== 
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-Add pages in hierarchical manner here. 
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-__Note:__ Some of instructions are organized via GoogleDocs DAG folder, assessable via yours or dag.labmember gmail account:  
-https://drive.google.com/?authuser=0#folders/0B8170PnHBunGYzA2OGNjMTEtYTg5ZS00NzE4LTg1N2ItY2JlYTFhYzdiMmY3  
- 
----- 
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-===== Lab organization ===== 
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-[[Lab-Organization:Lab-Organization_GoogleDrive]] 
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-[[Lab-Organization:Lab-Organization_Calendars]] 
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-[[Lab-Organization:Lab-Organization_Zotero_and_GitHub]] 
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- 
-===== BrainVoyager ===== 
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-[[BrainVoyager:BrainVoyager_Resources]] 
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-[[BrainVoyager:BrainVoyager_Shortcuts]] 
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-[[BrainVoyager:BrainVoyager_Install_On_Linux]] 
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-[[BrainVoyager:BrainVoyager_Probabilistic_Maps]] 
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-[[BrainVoyager:BrainVoyager_Surfaces]] 
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-[[BrainVoyager:BrainVoyager_Dongles]] 
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-[[BrainVoyager:BrainVoyager_TransformVMP]] 
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-[[BrainVoyager:BrainVoyager_HumanAlignment]] 
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-[[BrainVoyager:BrainVoyager_Contrasts]] 
- 
-===== NeuroElf ===== 
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-[[NeuroElf:NeuroElf_resources]] Help and installation, DAG-specific bug fixes! 
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-[[NeuroElf:NeuroElf_pipeline]] 
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-[[NeuroElf:NeuroElf_based_functions]] 
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-[[NeuroElf:NeuroElf_BrainVoyager]] 
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-[[NeuroElf:NeuroElf_ToDo]] 
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-[[NeuroElf:NeuroElf_pipeline_v2]] 
-===== JIP ===== 
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-http://www.nmr.mgh.harvard.edu/~jbm/jip/ 
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-[[JIP:JIP_Install_On_Linux_Gnome]] 
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-===== Monkeypsych ===== 
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-[[Monkeypsych:Data_parameters]] 
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-[[Monkeypsych:Monkeypsych_installation]] 
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-[[Monkeypsych:Monkeypsych_changelog]] 
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-[[Monkeypsych:Monkeypsych_todo]] 
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-===== TDT ===== 
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-[[TDT:TDT_resources]] 
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-[[TDT:TDT_status]] 
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-[[TDT:TDT_ToDo]] 
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-[[TDT:TDT_FAQ]] 
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-===== MATLAB ===== 
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-[[MATLAB:MATLAB_Resources]] 
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-[[MATLAB:MATLAB_helpful_hacks]] 
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-[[MATLAB:MATLAB_documentation_guidelines]] 
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-[[MATLAB:MATLAB_FieldTrip]] 
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-[[MATLAB:MATLAB_PATH]] 
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-===== Atlases ===== 
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-Anatomical atlases and other resources 
- 
-[[Atlases:Atlases_resources]] 
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-http://culhamlab.ssc.uwo.ca/fmri4newbies/primeroncorticalsulci.html 
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-===== References ===== 
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-[[References:Zotero_instructions]] 
-===== Decision-Making ===== 
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-[[Decision-making:Decision-making_Resources]] 
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-===== Git source control ====== 
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-[[Git:Git_Resources]] 
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-===== Links ===== 
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-Miscellaneous science-related links you would like to share (with brief description) 
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-[[Links:Links_fMRI]] 
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-[[Links:Links_ephys]] 
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-[[Links:Links_statistics]] 
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-[[Links:Links_fun]] 
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-===== Linux ===== 
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-[[Linux:Linux_hacks]] 
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-===== Setups ===== 
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-[[Setups:Setup1]] 
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-[[Setups:Setup2]] 
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-[[Setups:Setup3]] 
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-[[Setups:UMG psychophysics setup]] 
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-[[Setups:DPZ MRI setup]] 
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-===== ePhys pipeline ===== 
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-[[ePhys pipeline:1) Pipeline overview]] 
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-[[ePhys pipeline:2) Synchronization]] 
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-[[ePhys pipeline:3) phys_gui]] 
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-[[ePhys pipeline:4) Sorting]] 
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-[[ePhys pipeline:5) Meta-info]] 
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-[[ePhys pipeline:6) TDT Trial structure]] 
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-[[ePhys pipeline:7) ToDo]] 
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-[[ePhys pipeline:8) External links]] 
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- 
- 
- 
-===== spike analysis pipeline ===== 
- 
-[[spike analysis pipeline:1 Pipeline overview]] 
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-[[spike analysis pipeline:2 Interactions with other pipelines]] 
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-[[spike analysis pipeline:3 Settings]] 
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-[[spike analysis pipeline:4 Defining conditions]] 
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- 
-[[spike analysis pipeline:Pipeline overview]] 
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-[[spike analysis pipeline:Intermediate Output]] 
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-[[spike analysis pipeline:Keys]] 
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-[[spike analysis pipeline:Defining conditions]] 
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-[[spike analysis pipeline:Space definition]] 
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-[[spike analysis pipeline:Statistics and tuning table]] 
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-[[spike analysis pipeline:Population analysis:Population PSTHs]] 
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- 
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-===== Setup installation guides ===== 
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-[[Setups:Setup installation guides:eye tracker]] 
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-[[Setups:Setup installation guides:parallel port]] 
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-[[Setups:Setup installation guides:DAQ]] 
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-===== Analysis ===== 
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-==== Stat ==== 
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-[[Analysis:Stat:FisherExactTest]] 
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-[[Analysis:Stat:StatPower]] 
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-[[Analysis:Stat:2DConfidenceEllipses]] 
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-[[Analysis:Stat:MarkovChain]] 
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-[[Analysis:Stat:ChiSquaredTest]] 
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-[[Analysis:Stat:r-to-ZTransform]] 
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-[[Analysis:Stat:ANOVA]] 
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-[[Analysis:Stat:BayesFactor]] 
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-==== fMRI ==== 
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-[[Analysis:fMRI:ExperimentalDesign]] 
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-[[Analysis:fMRI:ActivationMaps]] 
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-[[Analysis:fMRI:CollinearPredictors]] 
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-[[Analysis:fMRI:SNR]] 
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-[[Analysis:fMRI:AFNI]] 
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-==== Spectral ==== 
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-[[Analysis:Spectral:SpectralResources]] 
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-==== Planner ==== 
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-[[Planner:Planner_Installation]] 
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-[[Planner:Planner_Usage]]  
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-===== 3DReco ===== 
- 
-[[3DReco:3DRecoResources]] 
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-[[3DReco:angled_chamber_pipeline]] 
- 
  
contents.txt · Last modified: 2023/11/13 17:09 by i.kagan