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contents [2017/08/06 23:04] – igorkagancontents [2023/11/13 17:09] (current) – [spike analysis pipeline] i.kagan
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 ===== Lab organization ===== ===== Lab organization =====
  
-[[LabOrganization:LabOrganizationCalendars]]+[[Lab-Organization:Lab-Organization_GoogleDrive]]
  
-===== Logs =====+[[Lab-Organization:Lab-Organization_Calendars]] 
 + 
 +[[Lab-Organization:Lab-Organization_Zotero_and_GitHub]]
  
-[[Logs:ScanLogs:3T_UMG_scanlog]] 
  
 ===== BrainVoyager ===== ===== BrainVoyager =====
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 [[BrainVoyager:BrainVoyager_HumanAlignment]] [[BrainVoyager:BrainVoyager_HumanAlignment]]
 +
 +[[BrainVoyager:BrainVoyager_Contrasts]]
  
 ===== NeuroElf ===== ===== NeuroElf =====
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 ===== Monkeypsych ===== ===== Monkeypsych =====
 +
 +
 +[[Monkeypsych:Data_parameters]]
  
 [[Monkeypsych:Monkeypsych_installation]] [[Monkeypsych:Monkeypsych_installation]]
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 [[MATLAB:MATLAB_documentation_guidelines]] [[MATLAB:MATLAB_documentation_guidelines]]
 +
 +[[MATLAB:MATLAB_FieldTrip]]
 +
 +[[MATLAB:MATLAB_PATH]]
 +
 ===== Atlases ===== ===== Atlases =====
  
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 [[References:Zotero_instructions]] [[References:Zotero_instructions]]
- 
 ===== Decision-Making ===== ===== Decision-Making =====
  
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 [[Git:Git_Resources]] [[Git:Git_Resources]]
 +
 +[[Git:DAG_git_general_ideas]]
  
 ===== Links ===== ===== Links =====
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 [[Setups:Setup3]] [[Setups:Setup3]]
 +
 +[[Setups:UMG psychophysics setup]]
 +
 +[[Setups:DPZ MRI setup]]
 +
 +
 +===== ePhys pipeline =====
 +
 +[[ePhys pipeline:1) Pipeline overview]]
 +
 +[[ePhys pipeline:2) Synchronization]]
 +
 +[[ePhys pipeline:3) phys_gui]]
 +
 +[[ePhys pipeline:4) Sorting]]
 +
 +[[ePhys pipeline:5) Meta-info]]
 +
 +[[ePhys pipeline:6) TDT Trial structure]]
 +
 +[[ePhys pipeline:7) ToDo]]
 +
 +[[ePhys pipeline:8) External links]]
 +
 +
 +
 +
 +===== spike analysis pipeline =====
 +
 +[[spike analysis pipeline:Pipeline overview]]
 +
 +[[spike analysis pipeline:Interaction with other pipelines]]
 +
 +[[spike analysis pipeline:Keys]]
 +
 +[[spike analysis pipeline:Defining conditions]]
 +
 +[[spike analysis pipeline:Space definition]]
 +
 +[[spike analysis pipeline:Statistics and tuning table]]
 +
 +[[spike analysis pipeline:Population matfile format]]
 +
 +[[spike analysis pipeline:Population analysis:Population PSTHs]]
 +
 +
 +
  
 ===== Setup installation guides ===== ===== Setup installation guides =====
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 [[Analysis:Stat:r-to-ZTransform]] [[Analysis:Stat:r-to-ZTransform]]
 +
 +[[Analysis:Stat:ANOVA]]
 +
 +[[Analysis:Stat:BayesFactor]]
 +
 ==== fMRI ==== ==== fMRI ====
  
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 [[Analysis:fMRI:CollinearPredictors]] [[Analysis:fMRI:CollinearPredictors]]
 +
 +[[Analysis:fMRI:SNR]]
 +
 +[[Analysis:fMRI:AFNI]]
  
 ==== Spectral ==== ==== Spectral ====
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 [[3DReco:angled_chamber_pipeline]] [[3DReco:angled_chamber_pipeline]]
 +
 +===== MRI =====
 +
 +[[MRI:PhysioMonitoring]]
 +
 +===== waveclus =====
 +
 +[[waveclus:output variables]]
 +
  
  
contents.1502060694.txt.gz · Last modified: 2022/12/29 07:15 (external edit)