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contents [2017/10/24 08:35]
lukas.schneider ePhys pipeline added
contents [2021/11/29 16:26] (current)
igorkagan [ePhys pipeline]
Line 17: Line 17:
 [[Lab-Organization:​Lab-Organization_Calendars]] [[Lab-Organization:​Lab-Organization_Calendars]]
  
-===== Logs =====+[[Lab-Organization:​Lab-Organization_Zotero_and_GitHub]]
  
-[[Logs:​ScanLogs:​3T_UMG_scanlog]] 
  
 ===== BrainVoyager ===== ===== BrainVoyager =====
Line 38: Line 37:
  
 [[BrainVoyager:​BrainVoyager_HumanAlignment]] [[BrainVoyager:​BrainVoyager_HumanAlignment]]
 +
 +[[BrainVoyager:​BrainVoyager_Contrasts]]
  
 ===== NeuroElf ===== ===== NeuroElf =====
Line 83: Line 84:
  
 [[MATLAB:​MATLAB_documentation_guidelines]] [[MATLAB:​MATLAB_documentation_guidelines]]
 +
 +[[MATLAB:​MATLAB_FieldTrip]]
 +
 +[[MATLAB:​MATLAB_PATH]]
 +
 ===== Atlases ===== ===== Atlases =====
  
Line 94: Line 100:
  
 [[References:​Zotero_instructions]] [[References:​Zotero_instructions]]
- 
 ===== Decision-Making ===== ===== Decision-Making =====
  
Line 126: Line 131:
  
 [[Setups:​Setup3]] [[Setups:​Setup3]]
 +
 +[[Setups:​UMG psychophysics setup]]
 +
 +[[Setups:​DPZ MRI setup]]
  
  
 ===== ePhys pipeline ===== ===== ePhys pipeline =====
  
-[[ePhys pipeline:Complete pipeline step by step]]+[[ePhys pipeline:Pipeline overview]]
  
-[[ePhys pipeline:Electrode depth file]]+[[ePhys pipeline:phys_gui]]
  
-[[ePhys pipeline:Creating Plexon sort codes]]+[[ePhys pipeline:waveclus]] 
 + 
 +[[ePhys pipeline:​Electrode depth file]]
  
 [[ePhys pipeline:​Same cells file]] [[ePhys pipeline:​Same cells file]]
  
-[[ePhys pipeline:excel table]]+[[ePhys pipeline:Excel table]] 
 + 
 +[[ePhys pipeline:​Dataset convention]] 
 + 
 +[[ePhys pipeline:​TDT2Plexon]] 
 + 
 +[[ePhys pipeline:​Spike analysis postprocessing]]
  
-[[ePhys pipeline:​Synchronize behavior to ePhys]] 
  
  
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 [[Analysis:​Stat:​ANOVA]] [[Analysis:​Stat:​ANOVA]]
 +
 +[[Analysis:​Stat:​BayesFactor]]
 +
 ==== fMRI ==== ==== fMRI ====
  
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 [[Analysis:​fMRI:​CollinearPredictors]] [[Analysis:​fMRI:​CollinearPredictors]]
 +
 +[[Analysis:​fMRI:​SNR]]
 +
 +[[Analysis:​fMRI:​AFNI]]
  
 ==== Spectral ==== ==== Spectral ====
contents.1508834122.txt.gz · Last modified: 2017/10/24 08:35 by lukas.schneider