User Tools

Site Tools


contents

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision
Previous revision
contents [2017/10/24 15:36] – [ePhys pipeline] lukas.schneidercontents [2023/11/13 17:09] (current) – [spike analysis pipeline] i.kagan
Line 17: Line 17:
 [[Lab-Organization:Lab-Organization_Calendars]] [[Lab-Organization:Lab-Organization_Calendars]]
  
-===== Logs =====+[[Lab-Organization:Lab-Organization_Zotero_and_GitHub]]
  
-[[Logs:ScanLogs:3T_UMG_scanlog]] 
  
 ===== BrainVoyager ===== ===== BrainVoyager =====
Line 38: Line 37:
  
 [[BrainVoyager:BrainVoyager_HumanAlignment]] [[BrainVoyager:BrainVoyager_HumanAlignment]]
 +
 +[[BrainVoyager:BrainVoyager_Contrasts]]
  
 ===== NeuroElf ===== ===== NeuroElf =====
Line 59: Line 60:
  
 ===== Monkeypsych ===== ===== Monkeypsych =====
 +
 +
 +[[Monkeypsych:Data_parameters]]
  
 [[Monkeypsych:Monkeypsych_installation]] [[Monkeypsych:Monkeypsych_installation]]
Line 83: Line 87:
  
 [[MATLAB:MATLAB_documentation_guidelines]] [[MATLAB:MATLAB_documentation_guidelines]]
 +
 +[[MATLAB:MATLAB_FieldTrip]]
 +
 +[[MATLAB:MATLAB_PATH]]
 +
 ===== Atlases ===== ===== Atlases =====
  
Line 94: Line 103:
  
 [[References:Zotero_instructions]] [[References:Zotero_instructions]]
- 
 ===== Decision-Making ===== ===== Decision-Making =====
  
Line 102: Line 110:
  
 [[Git:Git_Resources]] [[Git:Git_Resources]]
 +
 +[[Git:DAG_git_general_ideas]]
  
 ===== Links ===== ===== Links =====
Line 126: Line 136:
  
 [[Setups:Setup3]] [[Setups:Setup3]]
 +
 +[[Setups:UMG psychophysics setup]]
 +
 +[[Setups:DPZ MRI setup]]
  
  
 ===== ePhys pipeline ===== ===== ePhys pipeline =====
  
-[[ePhys pipeline:Pipeline overview]]+[[ePhys pipeline:1) Pipeline overview]]
  
-[[ePhys pipeline:phys_gui]]+[[ePhys pipeline:2) Synchronization]]
  
-[[ePhys pipeline:waveclus]]+[[ePhys pipeline:3) phys_gui]]
  
-[[ePhys pipeline:Electrode depth file]]+[[ePhys pipeline:4) Sorting]]
  
-[[ePhys pipeline:Same cells file]]+[[ePhys pipeline:5) Meta-info]] 
 + 
 +[[ePhys pipeline:6) TDT Trial structure]] 
 + 
 +[[ePhys pipeline:7) ToDo]] 
 + 
 +[[ePhys pipeline:8) External links]] 
 + 
 + 
 + 
 + 
 +===== spike analysis pipeline ===== 
 + 
 +[[spike analysis pipeline:Pipeline overview]] 
 + 
 +[[spike analysis pipeline:Interaction with other pipelines]] 
 + 
 +[[spike analysis pipeline:Keys]] 
 + 
 +[[spike analysis pipeline:Defining conditions]] 
 + 
 +[[spike analysis pipeline:Space definition]] 
 + 
 +[[spike analysis pipeline:Statistics and tuning table]] 
 + 
 +[[spike analysis pipeline:Population matfile format]] 
 + 
 +[[spike analysis pipeline:Population analysis:Population PSTHs]]
  
-[[ePhys pipeline:Excel table]] 
  
  
Line 170: Line 210:
  
 [[Analysis:Stat:ANOVA]] [[Analysis:Stat:ANOVA]]
 +
 +[[Analysis:Stat:BayesFactor]]
 +
 ==== fMRI ==== ==== fMRI ====
  
Line 177: Line 220:
  
 [[Analysis:fMRI:CollinearPredictors]] [[Analysis:fMRI:CollinearPredictors]]
 +
 +[[Analysis:fMRI:SNR]]
 +
 +[[Analysis:fMRI:AFNI]]
  
 ==== Spectral ==== ==== Spectral ====
Line 193: Line 240:
  
 [[3DReco:angled_chamber_pipeline]] [[3DReco:angled_chamber_pipeline]]
 +
 +===== MRI =====
 +
 +[[MRI:PhysioMonitoring]]
 +
 +===== waveclus =====
 +
 +[[waveclus:output variables]]
 +
  
  
contents.1508859377.txt.gz · Last modified: 2022/12/29 07:15 (external edit)