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contents [2021/07/28 11:02] – [ePhys pipeline] igorkagancontents [2023/11/13 17:09] (current) – [spike analysis pipeline] i.kagan
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 [[Lab-Organization:Lab-Organization_Zotero_and_GitHub]] [[Lab-Organization:Lab-Organization_Zotero_and_GitHub]]
-===== Logs ===== 
  
-[[Logs:ScanLogs:3T_UMG_scanlog]] 
  
 ===== BrainVoyager ===== ===== BrainVoyager =====
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 ===== Monkeypsych ===== ===== Monkeypsych =====
 +
 +
 +[[Monkeypsych:Data_parameters]]
  
 [[Monkeypsych:Monkeypsych_installation]] [[Monkeypsych:Monkeypsych_installation]]
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 [[MATLAB:MATLAB_PATH]] [[MATLAB:MATLAB_PATH]]
 +
 ===== Atlases ===== ===== Atlases =====
  
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 [[Git:Git_Resources]] [[Git:Git_Resources]]
 +
 +[[Git:DAG_git_general_ideas]]
  
 ===== Links ===== ===== Links =====
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 ===== ePhys pipeline ===== ===== ePhys pipeline =====
  
-[[ePhys pipeline:Pipeline overview]]+[[ePhys pipeline:1) Pipeline overview]]
  
-[[ePhys pipeline:phys_gui]]+[[ePhys pipeline:2) Synchronization]]
  
-[[ePhys pipeline:waveclus]]+[[ePhys pipeline:3) phys_gui]]
  
-[[ePhys pipeline:Electrode depth file]]+[[ePhys pipeline:4) Sorting]]
  
-[[ePhys pipeline:Same cells file]]+[[ePhys pipeline:5) Meta-info]]
  
-[[ePhys pipeline:Excel table]]+[[ePhys pipeline:6) TDT Trial structure]]
  
-[[ePhys pipeline:Dataset convention]]+[[ePhys pipeline:7) ToDo]]
  
-[[ePhys pipeline:TDT2Plexon]]+[[ePhys pipeline:8) External links]] 
 + 
 + 
 + 
 + 
 +===== spike analysis pipeline ===== 
 + 
 +[[spike analysis pipeline:Pipeline overview]] 
 + 
 +[[spike analysis pipeline:Interaction with other pipelines]] 
 + 
 +[[spike analysis pipeline:Keys]] 
 + 
 +[[spike analysis pipeline:Defining conditions]] 
 + 
 +[[spike analysis pipeline:Space definition]] 
 + 
 +[[spike analysis pipeline:Statistics and tuning table]] 
 + 
 +[[spike analysis pipeline:Population matfile format]] 
 + 
 +[[spike analysis pipeline:Population analysis:Population PSTHs]]
  
-[[ePhys pipeline:Spike analysis postprocessing]] 
  
  
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 [[Analysis:Stat:BayesFactor]] [[Analysis:Stat:BayesFactor]]
 +
 ==== fMRI ==== ==== fMRI ====
  
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 [[3DReco:angled_chamber_pipeline]] [[3DReco:angled_chamber_pipeline]]
 +
 +===== MRI =====
 +
 +[[MRI:PhysioMonitoring]]
 +
 +===== waveclus =====
 +
 +[[waveclus:output variables]]
 +
  
  
contents.1627470168.txt.gz · Last modified: 2022/12/29 07:15 (external edit)