Differences

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--- ephys_pipeline:1_pipeline_overview [2022/03/17 14:20] – [General Workflow] lukas.schneider
+++ ephys_pipeline:1_pipeline_overview [2022/12/29 07:15] (current) – external edit 127.0.0.1
@@ Line 16: / Line 16: @@
 ===== General Workflow =====
-  - Fill in [[ephys_pipeline:5_Meta-info|Electrode depths file]] (required as first step for WC pipeline)
+  - Fill in [[ephys_pipeline:5_Meta-info#electrode_depths file|Electrode depths file]] (required as first step for WC pipeline)
   - WC: Create waveclus pre-clustering files (implemented in [[ephys_pipeline:3_phys_gui|phys_gui]])
   - WC: Run waveclus and sort for all channels, don’t forget to save (wave_clus3new3, MATLAB 2014+)
@@ Line 29: / Line 29: @@
   - If you have finalized the sorting, create combined (phys+behavior) files (implemented in [[ephys_pipeline:3_phys_gui|phys_gui]]) (yes, once again, now that you have a different amount of cells)
   - Complete [[ephys_pipeline:5_Meta-info#same_cells file|Same cells file]]
-  - Automatically update the automatic_sorting sheet from the [[ephys_pipeline:5_Meta-info|Excel sorting table]] using [[ephys_pipeline:3_phys_gui|phys_gui]]
+  - Automatically update the automatic_sorting sheet from the [[ephys_pipeline:5_Meta-info#sorted_neurons table|Excel sorting table]] using [[ephys_pipeline:3_phys_gui|phys_gui]]
-  - Copy the automatic_soting entries to the final_sorting sheet of the [[ephys_pipeline:5_Meta-info|Excel sorting table]] and complete with manual entries.
+  - Copy the automatic_soting entries to the final_sorting sheet of the [[ephys_pipeline:5_Meta-info#sorted_neurons table|Excel sorting table]] and complete with manual entries.