Differences

This shows you the differences between two versions of the page.

--- ephys_pipeline:8_sorted_neurons_table [2022/01/11 13:22] – [Automatically created entries] lukas.schneider
+++ ephys_pipeline:8_sorted_neurons_table [2022/01/11 13:23] (current) – removed lukas.schneider
@@ Line 1: / Line 1: @@
-====== Sorted neurons excel table ======
-Find/create the Sorted neurons excel table corresponding to your monkey in the following location:
-C:\Users\username\Dropbox\DAG\phys\Monkey_phys_dpz\Mon_sorted_neurons.xlsx
-(replace username with your username, Monkey with the monkey's name and Mon with the first three letters of the monkey's name).
-There are two main sheets in this excel file:
-  * automatic_sorting
-  * final_sorting
-The idea is, that a large part of the information can be updated automatically (**see...**), while some information has to be added manually in the final_sorting sheet.
-For both sheets, each line represents one unit recorded in one block (and run) AND/OR the corresponding LFP site
-===== Manually added entries =====
-^SNR_rank ^Single_rank ^Stability_rank ^Set ^Target ^Hemisphere ^Grid ^x ^y ^
-| 1 | 1 | 0 | 1 | dPul|left|22.5|-5|8|
-| 3 | 2 | 1 | 1 | dPul|left|22.5|-5|8|
-The first three entries should be taken from your notes during sorting.
-  * SNR_rank: Signal to noise ratio assessment (1 - best SNR to 3 - marginal SNR)
-  * Single_rank: Multiunit or single unit (1 - Single unit (SU) to 3 - Multiunit (MU) )
-  * Stability_rank: How stable were the features across time (0 - unit appeared or disappeared during the course of the run; 1 - stable)
-The other entries typically don't change within a session and can be taken from the handwritten log (notes taken during recording, to be found in Y:\Logs\Phys
-  * Set: Dataset, relevant for assigning to specific project (see [[ephys_pipeline:dataset_convention|dataset convention]])
-  * Target: Area
-  * Hemisphere: left/right
-  * Grid: grid identifier (diameter.number)
-  * x: grid hole coordinate x
-  * y: grid hole coordinate y
-===== Electrode travel =====
-Last, but not least, there is another entry which is typically calculated inside the table using different approaches per experimenter: Electrode_travel. Several columns serve the purpose of calculating the electrode travel (from top of the grid).
-===== Dataset convention =====
-^ Numeric code	^ Meaning ^
-|General notes	|Neuron set IDs with no decimals correspond to the ones in which the task had the desired characteristics for a given dataset, e.g. set =2 gaze modulation with 3 initial starting locations 15° horizontal eccentricity and 10° vertical eccentricity; set=2.1 even when recorded before than 2, it contains a different eccentricity that was not used for the final dataset |
-|Additional notes	|when unit ID has a termination "a" e.g Lin_20160506_05a it means for that neuron the saccade target size matched the reach target size |
-|1|	Direct-visually- and memory-guided saccade dataset|
-|2|	Gaze modulation dataset, i.e. memory saccades, rectangular grid of targets starting at -15°, 0°, +15°|
-|2.1|	Memory saccades center-out / out-center 12° and 24° eccentricity (blocked per run)|
-|2.2|	Memory saccades center-out & out-center 12° and 24° eccentricity (interleaved in the same run)|
-|2.3|	Memory saccades, rectangular grid of targets starting at -12°, 0°, +12°, saccading 12° peripherally. In this dataset there were trials in which fixation was required instead of a saccade. From this dataset onwards ITI was recorded as well|
-|2.4|	Memory saccades, rectangular grid of targets starting at -12°, 0°, +12°, or  -15°, 0°, +15° In this dataset there were trials in which fixation was required instead of a saccade |
-|3|	Reach dataset|
-|3.1|	Reach dataset, joint reach task|
-To differentiate inactivation from control runs, we also indicate this by assigning a different data(sub-)set. Ideally, following the logic above, this would mean something like 3.5 for control and 3.6 for inactivation. Currently 31 and 32 are used respectively. For convention, Inactivation data(sub-)set value should always be higher than the respective control.
-===== Other entries ??? =====
-^Difficult_sorting_or_unstable_ ^Other_potential_reasons_to_ignore_or_check ^Runcomplete ^Usable ^Comments ^task ^