ephys_pipeline:excel_table
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
ephys_pipeline:excel_table [2017/10/24 18:10] – [Automaticly created entries] lukas.schneider | ephys_pipeline:excel_table [2022/01/11 13:22] (current) – removed lukas.schneider | ||
---|---|---|---|
Line 1: | Line 1: | ||
- | ====== Sorted neurons excel table ====== | ||
- | Find/create the electrode depth file corresponding to your monkey in the following location: | ||
- | C: | ||
- | (replace username with your username, Monkey with the monkey' | ||
- | |||
- | There are two main sheets in this excel file: | ||
- | * automatic_sorting | ||
- | * final_sorting | ||
- | The idea is, that a large part of the information can be updated automatically (**see...**), | ||
- | For both sheets, each line represents one unit recorded in one block (and run) AND/OR the corresponding LFP site | ||
- | |||
- | ===== Automatically created entries ===== | ||
- | ^Monkey ^Session ^Date ^Run ^Block ^Chan ^z ^Unit ^N_spk ^Neuron_ID ^Site_ID ^Times_same_unit ^ | ||
- | | Lin | 1 | 2010508 | 3 | 1 | 1 |15000|a|15251|Lin_20150508_01|Lin_20150508_Site_01|1| | ||
- | | Lin | 1 | 2010508 | 4 | 2 | 1 |15000|a|15251|Lin_20150508_01|Lin_20150508_Site_01|1| | ||
- | |||
- | * Monkey: monkey initials (first 3 letters) | ||
- | * Session: A session counter (irrelevant, | ||
- | * Date: Date of recording | ||
- | * Run: Corresponding behavioral run | ||
- | * Block: ephys recording block | ||
- | * Chan: electrode number (channel) | ||
- | * z: Electrode depth (from guide tube tip) - taken from [[ephys_pipeline: | ||
- | * Unit: sortcode assigned to this cell (a=first, | ||
- | * N_spk: Total spike count | ||
- | * Neuron_ID: Cell identifier (the [[ephys_pipeline: | ||
- | * Site_ID: LFP site identifier (Based on electrode depth, same site can be recorded in different blocks and at the same time with different units) | ||
- | * Times_same_unit: | ||
- | |||
- | ===== Manually added entries ===== | ||
- | ^SNR_rank ^Single_rank ^Stability_rank ^Set ^Target ^Hemisphere ^Grid ^x ^y ^ | ||
- | | 1 | 1 | 2 | 1 | dPul|left|22.5|-5|8| | ||
- | | 1 | 2 | 1 | 1 | dPul|left|22.5|-5|8| | ||
- | |||
- | The first three entries should be taken from your notes during sorting. For internal ranking conventions see **???** | ||
- | * SNR_rank: Signal to noise ratio assessment | ||
- | * Single_rank: | ||
- | * Stability_rank: | ||
- | |||
- | The other entries typically don't change within a session and can be taken from the log file | ||
- | * Set: Dataset, relevant for assigning to specific project (**see ...**) | ||
- | * Target: Area | ||
- | * Hemisphere: left/right | ||
- | * Grid: grid identifier (diameter.number) | ||
- | * x: grid hole coordinate x | ||
- | * y: grid hole coordinate y | ||
- | |||
- | ===== Other entries ??? ===== | ||
- | ^Difficult_sorting_or_unstable_ ^Other_potential_reasons_to_ignore_or_check ^Runcomplete ^Usable ^Comments ^ | ||
- | |||
- | Last, but not least, there is another entry which is typically calculated inside the table using different approaches per experimenter: | ||
- | |||
ephys_pipeline/excel_table.1508868613.txt.gz · Last modified: 2022/12/29 07:15 (external edit)