ephys_pipeline:phys_gui
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ephys_pipeline:phys_gui [2017/10/24 22:42] – lukas.schneider | ephys_pipeline:phys_gui [2022/01/11 13:24] (current) – removed lukas.schneider | ||
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- | ====== Phys gui ====== | ||
- | Initiate phys_gui by using the command phys_gui_working | ||
- | \\ A figure will pop up which looks something like this: | ||
- | {{ : | ||
- | Select your monkey from the dropdown menu | ||
- | \\ Select the session folders you want to process afer hitting the "Add date from list" button | ||
- | \\ If you hit " | ||
- | |||
- | ===== Rename folders ===== | ||
- | In later TDT software versions (synapse - setup 3), the folder naming is different. For converting folders recorded with synapse to the old (our standard) folder naming, check the box " | ||
- | |||
- | ===== Automatic waveclus clustering ===== | ||
- | If you want to use the waveclus pipeline, you first need to create waveclus sortcodes. You can do so by checking " | ||
- | |||
- | ===== Create Plexon files from snippets ===== | ||
- | If you want (or have) to use the online detected snippets, check " | ||
- | |||
- | ===== Create Plexon files from waveclus sortcodes ===== | ||
- | After you sorted with waveclus, you can create a plexon file from your saved sortcodes. Check " | ||
- | |||
- | ===== Create TDT sortcode from PLX ===== | ||
- | In case you used the online snippets to create your plexon files, you can simply add another sortcode attached to the original TDT blocks. Note that at the moment, this step is only needed for the online snippets, but not for Realigned snippets (-> to be completely removed) | ||
- | |||
- | ===== Combine ephys and behavioral data ===== | ||
- | After you are done with sorting, you can synchronize your recorded data with behavioral data, adding LFP and spike information in the trial structure format that monkeypsych uses. Check " | ||
- | \\ In order to indicate which type of sorting you want to use, select one option in the " | ||
- | \\ " | ||
- | \\ " | ||
- | \\ " | ||
- | \\ Chose " | ||
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- | ===== Create Excel entries ===== | ||
- | Check " | ||
ephys_pipeline/phys_gui.1508884950.txt.gz · Last modified: 2022/12/29 07:15 (external edit)