ephys_pipeline:phys_gui
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
ephys_pipeline:phys_gui [2017/11/23 12:31] – TDTsortcode bypassed lukas.schneider | ephys_pipeline:phys_gui [2022/01/11 13:24] (current) – removed lukas.schneider | ||
---|---|---|---|
Line 1: | Line 1: | ||
- | ====== Phys gui ====== | ||
- | Initiate phys_gui by using the command phys_gui_working | ||
- | \\ A figure will pop up which looks something like this: | ||
- | {{ : | ||
- | Select your monkey from the dropdown menu | ||
- | \\ Select the session folders you want to process afer hitting the "Add date from list" button | ||
- | \\ If you hit " | ||
- | |||
- | ===== Rename folders ===== | ||
- | In later TDT software versions (synapse - setup 3), the folder naming is different. For converting folders recorded with synapse to the old (our standard) folder naming, check the box " | ||
- | |||
- | ===== Automatic waveclus clustering ===== | ||
- | If you want to use the waveclus pipeline, you first need to create waveclus sortcodes. You can do so by checking " | ||
- | |||
- | ===== Create Plexon files from snippets ===== | ||
- | If you want (or have) to use the online detected snippets, check " | ||
- | |||
- | ===== Create Plexon files from waveclus sortcodes ===== | ||
- | After you sorted with waveclus, you can create a plexon file from your saved sortcodes. Check " | ||
- | |||
- | ===== Combine ephys and behavioral data ===== | ||
- | After you are done with sorting, you can synchronize your recorded data with behavioral data, adding LFP and spike information in the trial structure format that monkeypsych uses. Check " | ||
- | \\ In order to indicate which type of sorting you want to use, select one option in the " | ||
- | \\ " | ||
- | \\ " | ||
- | \\ " | ||
- | \\ Chose " | ||
- | |||
- | ===== Create Excel entries ===== | ||
- | Check " | ||
ephys_pipeline/phys_gui.1511440294.txt.gz · Last modified: 2022/12/29 07:15 (external edit)