ephys_pipeline:phys_gui
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ephys_pipeline:phys_gui [2021/11/29 15:18] – igorkagan | ephys_pipeline:phys_gui [2022/01/11 13:24] (current) – removed lukas.schneider | ||
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- | ====== Phys gui ====== | ||
- | Initiate phys_gui by using the command phys_gui_working | ||
- | \\ A figure will pop up which looks something like this: | ||
- | {{ : | ||
- | Select your monkey from the dropdown menu | ||
- | \\ Select the session folders you want to process after hitting the "Add date from list" button | ||
- | \\ If you hit " | ||
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- | ===== Rename folders ===== | ||
- | In later TDT software versions (synapse - setup 3), the folder naming is different. For converting folders recorded with synapse to the old (our standard) folder naming, check the box " | ||
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- | ===== Automatic waveclus clustering ===== | ||
- | If you want to use the waveclus pipeline, you first need to create waveclus sortcodes. You can do so by checking " | ||
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- | ===== Create Plexon files from snippets ===== | ||
- | If you want (or have) to use the online detected snippets, check " | ||
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- | ===== Create Plexon files from waveclus sortcodes ===== | ||
- | After you sorted with waveclus, you can create a plexon file from your saved sortcodes. Check " | ||
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- | ===== Combine ephys and behavioral data ===== | ||
- | After you are done with sorting, you can synchronize your recorded data with behavioral data, adding LFP and spike information in the trial structure format that monkeypsych uses. Check " | ||
- | \\ In order to indicate which type of sorting you want to use, select one option in the " | ||
- | \\ " | ||
- | \\ " | ||
- | \\ " | ||
- | \\ Choose " | ||
- | \\ | ||
- | \\ There is also an option for disregarding LFP. If you select this option, LFP data in the combined file will not be updated (in case it has been processed previously) or completely left out (if it hasn't been processed before). Use this option as long as you are resorting. You can also add LFP dat at a later point. | ||
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- | ===== Create Excel entries ===== | ||
- | Check " | ||
ephys_pipeline/phys_gui.1638199080.txt.gz · Last modified: 2022/12/29 07:15 (external edit)