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ephys_pipeline:pipeline_overview [2017/10/26 09:52] – [Waveclus pipeline] lukas.schneiderephys_pipeline:pipeline_overview [2017/11/23 12:45] – [Waveclus pipeline] lukas.schneider
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 ===== Plexon file naming ===== ===== Plexon file naming =====
-\\ Session_blocks_N.plx are based on online snippets+Session_blocks_N.plx are based on online snippets
 \\ Session_realigned_blocks_N.plx are based on realigned online snippets \\ Session_realigned_blocks_N.plx are based on realigned online snippets
 \\ Session_from_BB_blocks_N.plx are based on waveclus clustering \\ Session_from_BB_blocks_N.plx are based on waveclus clustering
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   - Now we need to assess which units are the same within and across blocks (based on channel, electrode depths, spike shapes and potentially tuning, carefully check notes for this). For that purpose you might want to do the following steps in any order (potentially even going back and forth):   - Now we need to assess which units are the same within and across blocks (based on channel, electrode depths, spike shapes and potentially tuning, carefully check notes for this). For that purpose you might want to do the following steps in any order (potentially even going back and forth):
      * Create combined (phys+behavior) files (implemented in [[ephys_pipeline:phys_gui|phys_gui]])      * Create combined (phys+behavior) files (implemented in [[ephys_pipeline:phys_gui|phys_gui]])
-     * Plot single unit tuning assuming cells are unique in every block (implemented in [[ephys_pipeline:phys_gui|phys_gui]]) - This is meant to help assessing if two "units" in the same block are actually the same+     * Plot single unit tuning assuming cells are unique in every block (implemented in [[ephys_pipeline:phys_gui|phys_gui]]) - This is meant to help assessing if two "units" in the same block might actually be the same (if they have very similar tuning properties)
      * Re-sort PLX file (combining same cells sort codes of same block same channel)      * Re-sort PLX file (combining same cells sort codes of same block same channel)
   - If you have finalized the sorting, create combined (phys+behavior) files (implemented in [[ephys_pipeline:phys_gui|phys_gui]]) (yes, once again, now that you have a different amount of cells)   - If you have finalized the sorting, create combined (phys+behavior) files (implemented in [[ephys_pipeline:phys_gui|phys_gui]]) (yes, once again, now that you have a different amount of cells)