ephys_pipeline:pipeline_overview
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ephys_pipeline:pipeline_overview [2017/10/24 22:58] – lukas.schneider | ephys_pipeline:pipeline_overview [2021/12/14 13:42] (current) – delete lukas.schneider | ||
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- | ====== Ephys pipeline overview ====== | ||
- | |||
- | ===== Folder structure ===== | ||
- | * Y: | ||
- | * Y: | ||
- | * Y: | ||
- | * Y: | ||
- | * | ||
- | ===== Waveclus pipeline ===== | ||
- | |||
- | - Fill in [[ephys_pipeline: | ||
- | - Create waveclus pre-clustering files (implemented in [[ephys_pipeline: | ||
- | - Run waveclus and sort for all channels, don’t forget to save (wave_clus3new3, | ||
- | * Preferentially separate spike shapes in difficult cases | ||
- | - Create plxfiles from WC (implemented in [[ephys_pipeline: | ||
- | - Check and clean PLX file AND TAKE NOTES (single/ | ||
- | - Create combined (phys+behavior) files (implemented in [[ephys_pipeline: | ||
- | - Plot single unit tuning assuming cells are unique in every block (implemented in [[ephys_pipeline: | ||
- | * Optional, this is meant to help assessing if two " | ||
- | - Assess which units are the same within and across blocks (based on channel, electrode depths, spike shapes and potentially tuning, carefully check notes for this) | ||
- | - Re-sort PLX file (combining same cells sort codes of same block same channel) | ||
- | * Optional for cases where it was not clear if the " | ||
- | - Fill in [[ephys_pipeline: | ||
- | - Automatically update the automatic_sorting sheet from the [[ephys_pipeline: | ||
- | - Copy the automatic_soting entries to the final_sorting sheet of the [[ephys_pipeline: | ||
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ephys_pipeline/pipeline_overview.1508885936.txt.gz · Last modified: 2022/12/29 07:15 (external edit)