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--- neuroelf:neuroelf_pipeline [2015/08/15 21:28] – igorkagan
+++ neuroelf:neuroelf_pipeline [2016/02/03 10:34] – [Requirements] lydia.gibson
@@ Line 1: / Line 1: @@
 ===== NeuroElf pipeline ======
+==== Requirements ====
+MATLAB 64bit\\ NeuroElf v1.0\\ BrainVoyager 2.4\\
+Following folders of Dropbox\DAG\Sources\bv_umg on your MATLAB path list:
+  * _4NeuroElf
+  * monkeypsych_mat2prt
+  * ne_era
+  * ne_pipeline_converged
+  * ne_prt2avg (add the script for your dataset)
+Following folders of Dropbox\DAG\Sources on your MATLAB path list:
+  * roi
+  * NaN
+  * Igtools
+See also [[neuroelf_resources]]
 ==== ne_fmriquality.m ====
 modification of original fmriquality with options for outliers analysis IK 2014
@@ Line 30: / Line 42: @@
 </code>
+=== ne_era_mdm.m ===
+This function extracts single-trial BOLD responses from VTCs using MDM::VOITimeCourses for each VOI specified in a given VOI file. If necessary, VOIs in BV native space are automatically converted into TAL space using ne_voicoord2tal.m.