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neuroelf:neuroelf_pipeline [2015/08/15 21:28]
igorkagan
neuroelf:neuroelf_pipeline [2016/02/03 10:34]
lydia.gibson [Requirements]
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 ===== NeuroElf pipeline ====== ===== NeuroElf pipeline ======
 +==== Requirements ==== 
 +MATLAB 64bit\\ NeuroElf v1.0\\ BrainVoyager 2.4\\ 
 +Following folders of Dropbox\DAG\Sources\bv_umg on your MATLAB path list: 
 +  * _4NeuroElf 
 +  * monkeypsych_mat2prt 
 +  * ne_era 
 +  * ne_pipeline_converged 
 +  * ne_prt2avg (add the script for your dataset) 
 +Following folders of Dropbox\DAG\Sources on your MATLAB path list: 
 +  * roi 
 +  * NaN 
 +  * Igtools 
 +See also [[neuroelf_resources]]
 ==== ne_fmriquality.m ==== ==== ne_fmriquality.m ====
 modification of original fmriquality with options for outliers analysis IK 2014 modification of original fmriquality with options for outliers analysis IK 2014
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 </​code>​ </​code>​
  
- +=== ne_era_mdm.m === 
 +This function extracts single-trial BOLD responses from VTCs using MDM::​VOITimeCourses for each VOI specified in a given VOI file. If necessary, VOIs in BV native space are automatically converted into TAL space using ne_voicoord2tal.m.
neuroelf/neuroelf_pipeline.txt · Last modified: 2016/02/03 10:34 by lydia.gibson