Differences

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--- neuroelf:neuroelf_resources [2015/08/15 21:13] – [Installation] igorkagan
+++ neuroelf:neuroelf_resources [2022/12/29 07:15] (current) – external edit 127.0.0.1
@@ Line 1: / Line 1: @@
 ====== NeuroElf Resources ======
+===== Online resources =====
 http://neuroelf.net/
@@ Line 7: / Line 9: @@
 https://www.youtube.com/channel/UC1sM-zqnmdcZOrRf-i0FLGg | NeuroElf youtube tutorials!
+===== Help =====
+For getting detailed help on each method of xff object (e.g. fmr), use:
+<code matlab>
+>> fmr.Help % to see all methods
+>> fmr.Help('Method') % e.g. fmr.Help('Realign') to see details of each method
+</code>
+See http://neuroelf.net/wiki/doku.php?id=obj.help
-----
+=== NeuroElf-based ERA ===
-===== DAG notes =====
+http://neuroelf.net/wiki/doku.php?id=neuroelf_gui_-_mdm_voi_condition_average_ui
+http://neuroelf.net/wiki/doku.php?id=mdm.voicondaverage
+===== DAG installation notes =====
-==== Installation ====
+) During installation, disable (remove from path) Chronux (if present): conflict with linec.m
-) During installation, disable (remove from path) Chronux: conflict with linec.m
 ) NeuroElf functions use std.m and var.m as in newer versions of MATLAB, with 3 inputs: e.g. Y = STD(X,FLAG,DIM).
-Therefore, NaN toolbox functions std.m and var.m are incompatible, remove it from path. Revise sterr.m and corrcoef_eval.m and place to Igtools.
+Therefore, old NaN toolbox functions std.m and var.m were incompatible and sterr.m was updated. The old version of std.m is now available as ig_std.m in Igtools (corrcoef_eval.m has not been revised yet but is not needed for running the pipeline).
 ) Starting from NeuroElf_v09d, many useful auxiliary scripts/functions are "hidden" behind @neuroelf method,
@@ Line 27: / Line 39: @@
 </code>
+:-O The functions below should be in the NeuroElf base (root) folder (e.g. D:\Sources\NeuroElf_v10_4503). **Only** this folder should be on the path!
-Currently required functions for DAG NeuroElf-based functions (\Sources\MATLAB\bv_umg):
+{{:neuroelf:neuroelf_base_folder_ikdag20150815.png?600|}}
-  * findfiles
-  * checkstruct
-  * renamefile
-  * dicom_dic
-Used by ne_pl_fmriqasheet.m:
-  * psctrans
-  * packmosaic
-  * scaledata
-  * minmaxmean
-  * splittocell
 )  There is a bug in NeuroElf v1.0 and v0.9d, to fix please replace the function dcm_Value.m in /xff/private with the function below. This function is used by createfmr.m
@@ Line 254: / Line 257: @@
 % end of function dcmval = interpret_dcmval(dcmval)
 </code>
-==== Help ====
-For getting detailed help on each method of xff object (e.g. fmr), use:
-<code matlab>
->> fmr.Help % to see all methods
->> fmr.Help('Method') % e.g. fmr.Help('Realign') to see details of each method
-</code>
-See http://neuroelf.net/wiki/doku.php?id=obj.help
-----
-NeuroElf-based ERA
-http://neuroelf.net/wiki/doku.php?id=neuroelf_gui_-_mdm_voi_condition_average_ui
-http://neuroelf.net/wiki/doku.php?id=mdm.voicondaverage