spike_analysis_pipeline:3_settings
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spike_analysis_pipeline:3_settings [2022/12/29 07:15] – external edit 127.0.0.1 | spike_analysis_pipeline:3_settings [2023/11/13 17:06] (current) – removed i.kagan | ||
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- | ====== Spike Settings (keys) ====== | ||
- | Reading in settings(keys) has a hierarchy in spike_analysis ! | ||
- | Higher Priority will always override lower priority. | ||
- | |||
- | . | ||
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- | ^Priority ^Settings file ^Info ^Location^ | ||
- | |1|ph_general_settings.m|default, | ||
- | |2|ph_project_settings.m|default settings for your project|Settings/ | ||
- | |3|ph_project_version_settings.m|small deviations for one version (f.e. different dataset)|Settings/ | ||
- | |4|additional_settings.m|probably obsolete, was used to define each run|Settings/ | ||
- | |||
- | ===== Data batching (keys.batching.) ===== | ||
- | ^Key ^Format ^Possible entries | ||
- | |monkeys|cellstr|{' | ||
- | |combine_monkeys|scalar|0/ | ||
- | |targets|cellstr|{' | ||
- | |Subregions_separately|scalar|0/ | ||
- | |Subregions|cell|struct(' | ||
- | |n_Subregions|scalar||numel(keys.batching.Subregions)| | ||
- | |||
- | |||
- | ===== General settings ===== | ||
- | ^Key ^Format ^Possible entries | ||
- | |keys.PSTH_binwidth|Scalar|0.01|resolution of PSTH's (in seconds)| | ||
- | |keys.gaussian_kernel|Scalar|0.02|std for the convolution to derive spike density (in seconds)| | ||
- | |keys.kernel_type|Char|' | ||
- | |keys.condition_parameters | ||
- | |keys.position_and_ plotting_arrangements |cellstr|{' | ||
- | |keys.contra_ipsi_relative_to|Char|' | ||
- | |||
- | ===== Trial selection keys ===== | ||
- | ^Key ^Format ^Possible entries | ||
- | |keys.cal.datasets|Array|see dataset convention|excludes runs with non-matching dataset| | ||
- | |keys.cal.completed|Scalar|0 or 1|excludes not completed trials (keep at 1 for now)| | ||
- | |keys.cal.effectors|Array|[0, | ||
- | |keys.cal.types|Array|[1, | ||
- | |keys.cal.reach_hand|Array|[0, | ||
- | |keys.cal.choice|Array|[0, | ||
- | |||
- | ===== Unit exclusion keys ===== | ||
- | ^Key ^Format ^Possible entries | ||
- | |keys.cal.datasets|Array|see dataset convention|excludes runs with non-matching dataset| | ||
- | |keys.cal.completed|Array|[0, | ||
- | |keys.cal.effectors|Array|[0, | ||
- | |keys.cal.types|Array|[1, | ||
- | |keys.cal.reach_hand|Array|[0, | ||
- | |keys.cal.choice|Array|[0, |
spike_analysis_pipeline/3_settings.1672298151.txt.gz · Last modified: 2022/12/29 07:15 by 127.0.0.1