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--- spike_analysis_pipeline:intermediate_output [2022/05/17 12:51] – lukas.schneider
+++ spike_analysis_pipeline:intermediate_output [2023/11/13 17:05] (current) – removed i.kagan
@@ Line 1: / Line 1: @@
-===== Interactions with other pipelines =====
-because spike_analysis incorporates the sorted_neurons table (f.e. unit_IDs and site_IDs) into behavior and ephys data, it is used as a first step in all ephys analysis.
-Outputs in Y:\Projects\project\ephys\version:
-^File                           ^Info ^
-| population_monkey_session.mat | spike data sorted by unit for each session                       |
-| sites_monkey_session.mat      | LFP data sorted by site for each session                         |
-| by_block_monkey_session.mat   | body signals sorted by block for each session                    |
-| Mon_sorted_neurons.xls        | copies of the used sorted neurons tables from dropbox            |
-| keys_Monkey.mat               | copy of the keys used when running ph_initiation                 |
-| tuning_table_combined.mat     | Anova results stored in a table                                  |
-| tuning_table_combined_CI.mat  | Anova results restructured according to contra/ipsi definitions  |
-| tuning_table_combined.xls     | simplified excel table                                           |
-| spike_shapes                  | Spike shapes, firing rates over time, and ISI plots for re-assessing spike sorting        |
-The three main files come in a specific data structure, which contain the same fields except for the respective data:
-population (spikes) sites (LFP) by_block(body signals)