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analysis:fmri:experimentaldesign

fMRI Experimental Design

Tools

Chris Rorden fMRI Simulator

optseq2

optseq2 is a tool for automatically scheduling events for rapid-presentation event-related (RPER) fMRI experiments (the schedule is the order and timing of events): http://surfer.nmr.mgh.harvard.edu/optseq/

Good explanation about optseq and event-related designs: http://andysbrainblog.blogspot.de/2012/09/optseq-and-event-related-designs.html

AFNI tools

Multiple Trial Type fMRI (mttfmri) MATLAB Toolbox

Theory

K. J. Friston, E. Zarahn, O. Josephs, R. N. A. Henson, A. M. Dale (1999) Stochastic Designs in Event-Related fMRI, NeuroImage, 10: 607-619. PMID: 10547338 http://www.ncbi.nlm.nih.gov/pubmed/%2010547338 friston1999_stochastic_designs_in_event-related_fmri.pdf

Design efficiency in fMRI: http://imaging.mrc-cbu.cam.ac.uk/imaging/DesignEfficiency

MIT imaging library (with paper PDFs): http://web.mit.edu/swg/imaginglibrary.htm

analysis/fmri/experimentaldesign.txt · Last modified: 2018/02/18 23:14 by igorkagan