• Y:\Projects\project\ephys\version
• Y:\Data\Sortcodes\Monkey_phys contains sorting related files
• Y:\Data\Monkey contains the behavioral data
• Y:\Data\Monkey_phys_mat_from_TDT contains recorded data, arranged in the same trial structure as the behavioral data
• Y:\Data\Monkey_phys_combined_monkeypsych_TDT contains trial structures with combined behavioral and ephys data
• Y:\Data\All_phys_preprocessing_log\Monkey_phys contains automatically created log files of all preprocessing performed
• \Dropbox\DAG\phys\Monkey_phys_dpz\Sorted_neurons excel table

• ph_initiation(project,{version1,version2,…})
• ph_initiate_populaiton_analysis

• Very important: In additi

Data conversion functions are located in Github External_modified/PLXTDT repository

• PLX2SPK
• PLX2TDT
• SEV2mat_working
• SPK2PLX
• TDT2PLX
• TDTbin2mat_working
• WC32SPK
• WC32SPK_concatenated
• WC32SPK_directly

The remaining code related to phys preprocessing (not including Waveclus and Plexon) can be found on Github Phys_preprocessing repository

• Core functions
  1. phys_gui_working.m
  2. phys_gui_execute.m
  3. TDT_trial_struct.m
  4. ph_combine_MP_and_TDT_data
  5. DAG_update_sorting_table.m
• Waveclus pipeline specific
  1. DAG_WC3_preprocessing.m
  2. DAG_parse_data_tdt.m
  3. DAG_SpikefilterChan.m
  4. WC32SPK_directly.m
  5. ph_readout_broadband_lag.m
• Plexon pipeline specific
  1. DAG_create_PLX.m
  2. DAG_update_plx_file_table.m
  3. ph_get_new_plx_extension.m
• Extra standalone functions
  1. DAG_derive_TDT_streamer_broadband_lag.m
  2. ph_debugging_GUI.m
  3. DAG_take_over_sortcode_PLX2PLX.m
• Only of historical relevance
  1. DAG_move_sorting_files.m Was used to transfer sortcodes to their current destination
  2. ph_derive_electrode_depth.m Was used to create the first electrode_depths file extracting from sorted_neurons table
  3. ph_derive_same_cells.m Was used to create the first same_cells file extracting from sorted_neurons table
  4. ph_simulate_history.m Was used to create the first log files