Table of Contents

Manually updated contents page

Add pages in hierarchical manner here.


Note: Some of instructions are organized via GoogleDocs DAG folder, assessable via yours or dag.labmember gmail account: https://drive.google.com/?authuser=0#folders/0B8170PnHBunGYzA2OGNjMTEtYTg5ZS00NzE4LTg1N2ItY2JlYTFhYzdiMmY3


Lab organization

Lab-Organization_GoogleDrive

Lab-Organization_Calendars

Lab-Organization_Zotero_and_GitHub

BrainVoyager

BrainVoyager_Resources

BrainVoyager_Shortcuts

BrainVoyager_Install_On_Linux

BrainVoyager_Probabilistic_Maps

BrainVoyager_Surfaces

BrainVoyager_Dongles

BrainVoyager_TransformVMP

BrainVoyager_HumanAlignment

BrainVoyager_Contrasts

NeuroElf

NeuroElf_resources Help and installation, DAG-specific bug fixes!

NeuroElf_pipeline

NeuroElf_based_functions

NeuroElf_BrainVoyager

NeuroElf_ToDo

NeuroElf_pipeline_v2

JIP

http://www.nmr.mgh.harvard.edu/~jbm/jip/

JIP_Install_On_Linux_Gnome

Monkeypsych

Data_parameters

Monkeypsych_installation

Monkeypsych_changelog

Monkeypsych_todo

TDT

TDT_resources

TDT_status

TDT_ToDo

TDT_FAQ

MATLAB

MATLAB_Resources

MATLAB_helpful_hacks

MATLAB_documentation_guidelines

MATLAB_FieldTrip

MATLAB_PATH

Atlases

Anatomical atlases and other resources

Atlases_resources

http://culhamlab.ssc.uwo.ca/fmri4newbies/primeroncorticalsulci.html

References

Zotero_instructions

Decision-Making

Decision-making_Resources

Git source control

Git_Resources

DAG_git_general_ideas

Miscellaneous science-related links you would like to share (with brief description)

Links_fMRI

Links_ephys

Links_statistics

Links_fun

Linux

Linux_hacks

Setups

Setup1

Setup2

Setup3

UMG psychophysics setup

DPZ MRI setup

ePhys pipeline

1) Pipeline overview

2) Synchronization

3) phys_gui

4) Sorting

5) Meta-info

6) TDT Trial structure

7) ToDo

8) External links

spike analysis pipeline

Pipeline overview

Interaction with other pipelines

Keys

Defining conditions

Space definition

Statistics and tuning table

Population matfile format

Population PSTHs

Setup installation guides

eye tracker

parallel port

DAQ

Analysis

Stat

FisherExactTest

StatPower

2DConfidenceEllipses

MarkovChain

ChiSquaredTest

r-to-ZTransform

ANOVA

BayesFactor

fMRI

ExperimentalDesign

ActivationMaps

CollinearPredictors

SNR

AFNI

Spectral

SpectralResources

Planner

Planner_Installation

Planner_Usage

3DReco

3DRecoResources

angled_chamber_pipeline

MRI

PhysioMonitoring

waveclus

output variables