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Table of Contents
Manually updated contents page
Add pages in hierarchical manner here.
Note: Some of instructions are organized via GoogleDocs DAG folder, assessable via yours or dag.labmember gmail account: https://drive.google.com/?authuser=0#folders/0B8170PnHBunGYzA2OGNjMTEtYTg5ZS00NzE4LTg1N2ItY2JlYTFhYzdiMmY3
Lab organization
BrainVoyager
NeuroElf
NeuroElf_resources Help and installation, DAG-specific bug fixes!
JIP
Monkeypsych
TDT
MATLAB
Atlases
Anatomical atlases and other resources
http://culhamlab.ssc.uwo.ca/fmri4newbies/primeroncorticalsulci.html
References
Decision-Making
Git source control
Links
Miscellaneous science-related links you would like to share (with brief description)
Linux
Setups
ePhys pipeline
spike analysis pipeline
Setup installation guides
Analysis
Stat
fMRI
Spectral
Planner
3DReco
MRI
waveclus
"whattofindwhere" and "wheretofindwhat" variable explanation
Our version of waveclus combines blocks recorded on the same electrode depth together and sets the same threshold for them. If electrode depth on a channel changes over the session, the data for different depths are stored in separate files (e.g. dataspikes_ch007_1.mat and dataspikes_ch007_2.mat). One need additional information to figure out the correspondence between recorded blocks and waveclus files.
How to figure out which WC file contains what blocks?
To figure out which blocks were stored